Below is a compilation of apps we, at San Francisco Sport and Spine Physical Therapy have used or had recommended that work well and align with what we do to get people better and help them stay that way!
If you have a particular favorite, please email sturdy@sfsspt.com with your suggestion.

MyFitnessPal — calorie and exercise tracker
http://www.myfitnesspal.com/

The Habit Factor — great for creating new habits around exercise, activity or anything
http://www.thehabitfactor.com/welcome/

Chronic Pain Tracker
http://www.medhelp.org/land/pain-tracker

My Pain Diary: Chronic Pain Management
http://itunes.apple.com/us/app/my-pain-diary-chronic-pain/id338627856?mt=8

Fit Bit
http://www.fitbit.com/

ZamZee.com – Fitness meter for the whole family, including kids!
http://www.zamzee.com/

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